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tasks/Haplotyper.wdl
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| fi | fi | ||||
| sentieon driver -t $nt \ | sentieon driver -t $nt \ | ||||
| --interval ${regions} -r ${ref_dir}/${fasta} \ | |||||
| $INTERVAL -r ${ref_dir}/${fasta} \ | |||||
| -i ${recaled_bam} \ | -i ${recaled_bam} \ | ||||
| --algo Haplotyper -d ${dbsnp_dir}/${dbsnp} \ | --algo Haplotyper -d ${dbsnp_dir}/${dbsnp} \ | ||||
| ${sample}.Haplotyper.vcf | ${sample}.Haplotyper.vcf |
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