1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/TNseq.wdl
View File
| output{ | output{ | ||||
| File raw_vcf = "${sample_id}.TNseq.raw.vcf" | File raw_vcf = "${sample_id}.TNseq.raw.vcf" | ||||
| File raw_vcf_index = "${sample_id}.TNseq.raw.vcf.idx" | File raw_vcf_index = "${sample_id}.TNseq.raw.vcf.idx" | ||||
| File vcf = "${sample_id}.bwa_TNseq.vcf" | |||||
| File vcf_index = "${sample_id}.bwa_TNseq.vcf.idx" | |||||
| File vcf = "${sample_id}.TNseq.vcf" | |||||
| File vcf_index = "${sample_id}.TNseq.vcf.idx" | |||||
| File contamination = "${sample_id}.contamination" | File contamination = "${sample_id}.contamination" | ||||
| File contamination_segments = "${sample_id}.contamination.segments" | File contamination_segments = "${sample_id}.contamination.segments" | ||||
| File orientation = "${sample_id}.orientation" | File orientation = "${sample_id}.orientation" |
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