call Haplotyper.Haplotyper as Haplotyper { | call Haplotyper.Haplotyper as Haplotyper { | ||||
input: | input: | ||||
SENTIEON_LICENSE=SENTIEON_LICENSE, | SENTIEON_LICENSE=SENTIEON_LICENSE, | ||||
sample=sample_id + '.N', | |||||
sample=sample_id + '_N', | |||||
fasta=ref_fasta, | fasta=ref_fasta, | ||||
ref_dir=ref_fasta_dir, | ref_dir=ref_fasta_dir, | ||||
recaled_bam=Sentieon_BQSR_normal.recaled_bam, | recaled_bam=Sentieon_BQSR_normal.recaled_bam, |