更新 'tasks/bcftools_concat.wdl'

tasks/bcftools_concat.wdl

@@ -14,10 +14,12 @@ task bcftools {
     set -e
     nt=$(nproc)
     
-    bcftools concat -a ${vcf_indels} ${vcf_snvs} -Oz -o ${sample_id}.strelka.vcf.gz
+    bcftools concat -a ${vcf_indels} ${vcf_snvs} -Oz -o ${sample_id}.strelka.vcf.gz          
     bcftools norm -m -both ${sample_id}.strelka.vcf.gz -O z -o ${sample_id}.strelka.norm.vcf.gz
     bcftools view -O z -f 'PASS' ${sample_id}.strelka.norm.vcf.gz -o ${sample_id}.strelka.PASS.vcf.gz
     bcftools index -t ${sample_id}.strelka.PASS.vcf.gz
+           
+    ls ./
 
   >>>