更新 'tasks/TNseq.wdl'

tasks/TNseq.wdl

@@ -26,13 +26,10 @@ task sentieon_TNseq{
         nt=$(nproc)
 
 
-        if [${normal_bam}];then
-            INPUT="-i ${tumor_bam} -i ${normal_bam}"
-            SAMPLE="--tumor_sample ${tumor_name} --normal_sample ${normal_name}"
-        else
-           INPUT="-i ${tumor_bam}"
-           SAMPLE="--tumor_sample ${tumor_name}"
-        fi
+
+        INPUT="-i ${tumor_bam} -i ${normal_bam}"
+        SAMPLE="--tumor_sample ${tumor_name} --normal_sample ${normal_name}"
+
 
         sentieon driver -t $nt -r ${ref_dir}/${ref_fasta} \
         $INPUT \