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workflow.wdl
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| call TNseq.sentieon_TNseq as sentieon_TNseq{ | call TNseq.sentieon_TNseq as sentieon_TNseq{ | ||||
| input: | input: | ||||
| sample_id = sample_id, | sample_id = sample_id, | ||||
| tumor_bam = Sentieon_BQSR_tumor.recaled_bam, | |||||
| tumor_bam_bai = Sentieon_BQSR_tumor.recaled_bam_index, | |||||
| normal_bam = Sentieon_BQSR_normal.recaled_bam, | |||||
| normal_bam_bai = Sentieon_BQSR_normal.recaled_bam_index, | |||||
| tumor_bam = tumor_bam, | |||||
| tumor_bam_bai = tumor_bam_bai, | |||||
| normal_bam = normal_bam, | |||||
| normal_bam_bai = normal_bam_bai, | |||||
| tumor_name = sample_id+'_T', | tumor_name = sample_id+'_T', | ||||
| normal_name = sample_id+'_N', | normal_name = sample_id+'_N', | ||||
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