更新 'workflow.wdl'

workflow.wdl

@@ -1,40 +1,21 @@
 import "./tasks/TNseq.wdl" as TNseq
 
 workflow {{ project_name }} {
-	#sample info
-    File? normal_in1
-    File? normal_in2
-	File? tumor_in1
-	File? tumor_in2
-    String sample_id
-	String Seq_platform
-	#reference fasta
+	String sample_id
+	File tumor_bam
+	File tumor_bam_bai
+	File normal_bam
+	File normal_bam_bai
+
+	File ref_dir
 	String ref_fasta
-	File ref_fasta_dir
-	File annot_gff
-    File dbsnp_dir
-    File dbmills_dir
-    String dbsnp
-    String db_mills
-    File? regions
-    Int? interval_padding
 	File germline_resource
 	File germline_resource_tbi
 
-	#docker
-    String docker_fastp
 	String docker_sentieon
+	String cluster_config
+	String disk_size
 	String SENTIEON_LICENSE
-	String docker_qualimap
-	String docker_manta
-	String docker_strelka
-
-	#config
-    String cluster_config
-    String disk_size
-	Boolean? fastqc
-	Boolean bamqc
-
 
 	call TNseq.sentieon_TNseq as sentieon_TNseq{
 	input:
@@ -59,5 +40,3 @@ workflow {{ project_name }} {
 
 }
 
-
-