更新 'tasks/TNseq.wdl'

tasks/TNseq.wdl

@@ -33,13 +33,13 @@ task sentieon_TNseq{
             INTERVAL=""
         fi
 
-        if [ ${normal_bam} ]; then
+        #if [ ${normal_bam} ]; then
             INPUT="-i ${tumor_bam} -i ${normal_bam}"
             SAMPLE="--tumor_sample ${tumor_name} --normal_sample ${normal_name}"
-        else
-           INPUT="-i ${tumor_bam}"
-           SAMPLE="--tumor_sample ${tumor_name}"
-        fi
+        #else
+        #   INPUT="-i ${tumor_bam}"
+        #   SAMPLE="--tumor_sample ${tumor_name}"
+        #fi
 
         sentieon driver -t $nt -r ${ref_dir}/${ref_fasta} \
         $INPUT $INTERVAL \