删除 'bcftools_concat.wdl'

bcftools_concat.wdl

@@ -1,33 +0,0 @@
-task bcftools {
-  
-  File ref_dir
-  String fasta
-  File vcf_indels
-  File vcf_snvs
-  String sample_id
-  String docker
-  String cluster_config
-  String disk_size
-
-  command <<<
-    set -o pipefail
-    set -e
-    nt=$(nproc)
-    
-    bcftools concat -a ${vcf_indels} ${vcf_snvs} -Oz -o ${sample_id}_stralka.vcf.gz
-    bcftools index -t ${sample_id}_stralka.vcf.gz
-
-  >>>
-  
-  runtime {
-    docker: docker
-    cluster: cluster_config
-    systemDisk: "cloud_ssd 40"
-    dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
-  }
-  
-  output {
-    File concat_vcf = "${sample_id}_stralka.vcf.gz"
-    File concat_vcf_index = "${sample_id}_stralka.vcf.gz.tbi"
-  }
-}