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@@ -1,3 +1,15 @@ |
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import "./tasks/BQSR.wdl" as Sentieon_BQSR |
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import "./tasks/TNseq.wdl" as TNseq |
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import "./tasks/TNscope.wdl" as TNscope |
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import "./tasks/manta.wdl" as manta_calling |
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import "./tasks/strelka.wdl" as strelka_calling |
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import "./tasks/bcftools.wdl" as bcftools |
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import "./tasks/bcftools_concat.wdl" as bcftools_concat |
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import "./tasks/annovar.wdl" as annovar |
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import "./tasks/Haplotyper.wdl" as Haplotyper |
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import "./tasks/MSIsensor.wdl" as MSIsensor |
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import "./tasks/tmb.wdl" as tmb |
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workflow {{ project_name }} { |
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#sample info |
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File? normal_deduped_bam |