Qualimap_pipeline/workflow.wdl

import "./tasks/qualimap.wdl" as qualimap

workflow {{ project_name }}{
	String sample_id
    File bam_file
    File bam_bai
    File annot_gff

    String docker_qualimap
    String cluster_config
    String disk_size


	call qualimap.qualimap as qualimap{
		input:
			sample_id = sample_id,
			bam_file = bam_file,
			bam_bai = bam_bai,
			annot_gff = annot_gff,
			docker = docker_qualimap,
			cluster_config = cluster_config,
			disk_size = disk_size
	}


}