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tasks/qualimap.wdl
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| set -o pipefail | set -o pipefail | ||||
| set -exo | set -exo | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| /opt/qualimap/qualimap bamqc -bam ${bam_file} -gff ${annot_gff} -outformat PDF:HTML -nt $nt -nr 500 -nw 1500 -outdir ${out_dir} --java-mem-size=60G | |||||
| /opt/qualimap/qualimap bamqc -bam ${bam_file} -gff ${annot_gff} -outformat PDF:HTML -nt $nt -nr 500 -nw 1500 -outdir ${out_dir} --java-mem-size=64G | |||||
| tar -zcvf ${out_dir}.tar ${out_dir} | tar -zcvf ${out_dir}.tar ${out_dir} | ||||
| >>> | >>> | ||||
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