import "./tasks/qualimap.wdl" as qualimap | |||||
workflow {{ project_name }}{ | |||||
String sample_id | |||||
File bam_file | |||||
File bam_bai | |||||
File annot_gff | |||||
String docker_qualimap | |||||
String cluster_config | |||||
String disk_size | |||||
call qualimap.qualimap as qualimap{ | |||||
input: | |||||
sample_id = sample_id, | |||||
bam_file = bam_file, | |||||
bam_bai = bam_bai, | |||||
annot_gff = annot_gff, | |||||
docker = docker_qualimap, | |||||
cluster_config = cluster_config, | |||||
disk_size = disk_size | |||||
} | |||||
} |