NGSCheckmate_pipeline/workflow.wdl

import "./tasks/fastq_ncm.wdl" as fastq_ncm

workflow {{ project_name }} {
  
  String sample_id
  File fastq_smp
  String output_id
  String subsampling_rate
  String docker
  String cluster_config
  String disk_size

  call fastq_ncm.fastq_ncm as fastq_ncm {
      input:
      fastq_smp = fastq_smp,
      out_id=output_id,
      subsampling_rate=subsampling_rate,
      docker=docker,
      disk_size=disk_size,
      cluster_config=cluster_config
    }

}