添加 'tasks/fastq_ncm.wdl'

tasks/fastq_ncm.wdl

@@ -0,0 +1,28 @@
+task fastq_ncm {
+  
+  File fastq_smp
+  String out_id
+  String subsampling_rate
+  String docker
+  String cluster_config
+  String disk_size
+
+  command <<<
+    set -o pipefail
+    set -e
+    nt=$(nproc)
+    python /NGSCheckMate/ncm_fastq.py -l ${fastq_smp} -O ${out_id} -N ChIP_batch -p $nt -pt /NGSCheckMate/SNP/SNP.pt -s ${subsampling_rate}
+    
+    tar cvf ${out_id}.tar ${out_id}
+  >>>
+
+  runtime {
+    docker:docker
+      cluster:cluster_config
+      systemDisk:"cloud_ssd 40"
+      dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/"
+  }
+  output {
+    File output="${out_id}.tar"
+  }
+}