1 changed files with 2 additions and 2 deletions
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tasks/fastq_ncm.wdl
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| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| python /NGSCheckMate/ncm_fastq.py -l ${fastq_smp} -O ${out_id} -N ChIP_batch -p $nt -pt /NGSCheckMate/SNP/SNP.pt -s ${subsampling_rate} | |||||
| python /NGSCheckMate/ncm_fastq.py -l ${fastq_smp} -O ${out_id} -N ChIP_batch -p $nt -pt /NGSCheckMate/SNP/SNP.pt | |||||
| #-s ${subsampling_rate} | |||||
| tar cvf ${out_id}.tar ${out_id} | tar cvf ${out_id}.tar ${out_id} | ||||
| >>> | >>> | ||||
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