@@ -11,8 +11,9 @@ task fastq_ncm { | |||
set -o pipefail | |||
set -e | |||
nt=$(nproc) | |||
python /NGSCheckMate/ncm_fastq.py -l ${fastq_smp} -O ${out_id} -N ChIP_batch -p $nt -pt /NGSCheckMate/SNP/SNP.pt | |||
python /NGSCheckMate/ncm_fastq.py -l ${fastq_smp} -O ${out_id} -p $nt -pt /NGSCheckMate/SNP/SNP.pt | |||
#-s ${subsampling_rate} | |||
#-N ChIP_batch | |||
tar cvf ${out_id}.tar ${out_id} | |||
>>> | |||