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tasks/CallableLoci.wdl
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| command <<< | command <<< | ||||
| set -o pipefail | set -o pipefail | ||||
| set -e | set -e | ||||
| java -jar /usr/GenomeAnalysisTK.jar \ | |||||
| java -jar /opt/GenomeAnalysisTK.jar \ | |||||
| -T CallableLoci \ | -T CallableLoci \ | ||||
| -R ${ref_dir}/${fasta} \ | -R ${ref_dir}/${fasta} \ | ||||
| -I ${bam} \ | -I ${bam} \ |
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