使用fastp对fastq文件进行质控, 使用fastqscreen对污染源进行检测
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  1. import "./tasks/fastp.wdl" as fastp
  2. workflow {{ project_name }} {
  3. input{
  4. Array[String] samples
  5. File fastq_dir
  6. String docker
  7. String cluster_config
  8. String disk_size
  9. }
  10. call fastp.fastp as fastp{
  11. input:
  12. samples=samples,
  13. fastq_dir=fastq_dir,
  14. docker=docker,
  15. cluster_config=cluster_config,
  16. disk_size=disk_size
  17. }
  18. }