使用fastp对fastq文件进行质控, 使用fastqscreen对污染源进行检测
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.

11 lines
655B

  1. {
  2. "{{project_name}}.sample_id": "{{ sample_id }}",
  3. "{{project_name}}.in1":"{{ in1 }}",
  4. "{{project_name}}.in2":"{{ in2 }}",
  5. "{{project_name}}.screen_ref_dir":"oss://hcc1395/reference_genome/fastq_screen_reference/",
  6. "{{project_name}}.fastq_screen_conf":"oss://hcc1395/reference_genome/fastq_screen_reference/fastq_screen.conf",
  7. "{{ project_name }}.cluster_config":"OnDemand bcs.es.c.8xlarge img-ubuntu-vpc",
  8. "{{ project_name }}.disk_size":"500",
  9. "{{ project_name }}.docker_fastqscreen":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/fastqscreen:0.12.0",
  10. "{{ project_name }}.docker_fastp":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/fastp:0.19.6"
  11. }