更新 'workflow.wdl'

workflow.wdl

@@ -1,10 +1,15 @@
 import "./tasks/fastp.wdl" as fastp
+import "./tasks/fastqscreen.wdl" as fastqscreen
+
 
 workflow {{ project_name }} {
     File in1
     File in2
     String sample_id
-    String docker
+    File screen_ref_dir
+    File fastq_screen_conf
+    String docker_fastp
+    String docker_fastqscreen
     String cluster_config
     String disk_size
 
@@ -14,7 +19,19 @@ workflow {{ project_name }} {
 			in1=in1,
 			in2=in2,
 			sample_id=sample_id,
-			docker=docker,
+			docker=docker_fastp,
+			cluster_config=cluster_config,
+			disk_size=disk_size
+			
+	
+	}
+
+    call fastqscreen.fastq_screen as fastq_screen{
+		input:
+			read1=in1,
+			read2=in2,
+			sample=sample_id,
+			docker=docker_fastqscreen,
 			cluster_config=cluster_config,
 			disk_size=disk_size