更新 'tasks/fastp.wdl'

tasks/fastp.wdl

@@ -1,33 +1,29 @@
 
 task fastp {
-
-    input {
         
-        # I/O options
-        File in1
-        File in2
-        String sample_id
+    # I/O options
+    File in1
+    File in2
+    String sample_id
 
-        Boolean? phred64 = false 
-        Boolean? fix_mgi_id = false
+    Boolean? phred64 = false 
+    Boolean? fix_mgi_id = false
 
-        String? adapter_sequence
-        String? adapter_sequence_r2
+    String? adapter_sequence
+    String? adapter_sequence_r2
 
-        Int? reads_to_process # specify how many reads/pairs to be processed. Default 0 means process all reads.
+    Int? reads_to_process # specify how many reads/pairs to be processed. Default 0 means process all reads.
 
-        # reporting options
-        String json = sample_id+"fastp.json"
-        String html = sample_id+"fastp.html"
-        String report_title = "\'fastp report\'"
+    # reporting options
+    String json = sample_id+"fastp.json"
+    String html = sample_id+"fastp.html"
+    String report_title = "\'fastp report\'"
 
-        # excute env
-        String docker
-        String cluster_config
-        String disk_size
-		
+    # excute env
+    String docker
+    String cluster_config
+    String disk_size
 
-    }
 
     String out1_name = sample_id+'clean_1.fastq'
     String out2_name = sample_id+'clean_2.fastq'