更新 'tasks/fastp.wdl'

tasks/fastp.wdl

@@ -29,10 +29,9 @@ task fastp {
     String out2_name = sample_id+'clean_2.fastq.gz'
 
     command <<<
-		
         set -o pipefail
-    	set -e
-    	nt=$(nproc)
+        set -e
+        nt=$(nproc)
                   
         # basic command
         /opt/conda/bin/fastp \
@@ -45,7 +44,6 @@ task fastp {
         --report_title ${report_title} \
         --thread $nt \
         --length_required 30
-
     >>>
 
     runtime {