删除 'tasks/bcftools.wdl'

tasks/bcftools.wdl

@@ -1,31 +0,0 @@
-task bcftools {
-  
-  File ref_dir
-  String fasta
-  File vcf
-  String basename = basename(vcf,".vcf")
-  String docker
-  String cluster_config
-  String disk_size
-
-  command <<<
-    set -o pipefail
-    set -e
-    nt=$(nproc)
-    
-    # bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf
-    # Split multiallelic sites
-    bcftools norm -m -both ${vcf} -o ${basename}.norm.vcf
-  >>>
-  
-  runtime {
-    docker: docker
-    cluster: cluster_config
-    systemDisk: "cloud_ssd 40"
-    dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
-  }
-  
-  output {
-    File norm_vcf = "${basename}.norm.vcf"
-  }
-}