更新 'workflow.wdl'

workflow.wdl

@@ -35,29 +35,14 @@ workflow {{ project_name }}{
 
     }
 
-    call MSIsensor.MSIsensor as MSIsensor{
-        input:
-            sample = sample_id,
-            ref_dir = ref_fasta_dir,
-            fasta = ref_fasta,
-            tumor_bam=tumor_bam,
-            tumor_bam_index =tumor_bam_bai,
-            normal_bam = normal_bam,
-            normal_bam_index=normal_bam_bai,
-            baseline=baseline,
-            docker = docker_MSIsensor,
-            cluster_config = cluster_config,
-            disk_size = disk_size
-    }
-
-	call AnnotSV.AnnotSV as delly_AnnotSV{
-		input:
-                sample=sample_id,
-                somatic_vcf= delly.pass_vcf,
-                annotsv_database=annotsv_database,
-                docker=docker_annotsv,
-                cluster_config=cluster_config,
-                disk_size=disk_size
-		
-	}
+	#call AnnotSV.AnnotSV as delly_AnnotSV{
+	#	input:
+    #            sample=sample_id,
+     #           somatic_vcf= delly.pass_vcf,
+      #          annotsv_database=annotsv_database,
+       #         docker=docker_annotsv,
+        #        cluster_config=cluster_config,
+         #       disk_size=disk_size
+		#
+	#}
 }