更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -96,6 +96,8 @@ task cnvkit{
        /root/miniconda2/bin/cnvkit.py call ${sample}.cns/${sample}.cns --center-at $center \
                   -o ${sample}.call.cns
                   
+       cp ${sample}.call.cns ${sample}.call.cns.bed
+                  
                 
 
         ls ./
@@ -114,7 +116,7 @@ task cnvkit{
 
     output{
         File out_file = "${sample}.tar"
-        File cnv_bed = "${sample}.call.cns"
+        File cnv_bed = "${sample}.call.cns.bed"
     }
 
 }