更新 'workflow.wdl'

workflow.wdl

     if (defined(normal_bams) && size(normal_bams) > 0) {
 	    call cnvkit_multi.cnvkit_multi as cnvkit_multi{
             input:
-            sample_id=sample_id,
-            ref_dir=ref_fasta_cnvkit,
-            fasta=ref_fasta,
-            ref_flat=ref_flat,
-            Ploidy=Ploidy,
-            bed_file=bed_file,
-            tumor_bam=tumor_bam,
-            tumor_bam_index=tumor_bam_bai,
-            normal_bams = inputBams,
-            normal_bam_indexs = inputBamIndexs,
-            docker=docker_cnvkit,
-            cluster_config=cluster_config,
-            disk_size=disk_size
-    }
-    } else {
+                sample_id=sample_id,
+                ref_dir=ref_fasta_cnvkit,
+                fasta=ref_fasta,
+                ref_flat=ref_flat,
+                Ploidy=Ploidy,
+                bed_file=bed_file,
+                tumor_bam=tumor_bam,
+                tumor_bam_index=tumor_bam_bai,
+                normal_bams = inputBams,
+                normal_bam_indexs = inputBamIndexs,
+                docker=docker_cnvkit,
+                cluster_config=cluster_config,
+                disk_size=disk_size
+     }
+    }else{
         call cnvkit.cnvkit as cnvkit{
             input:
                 sample_id=sample_id,