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{ |
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"{{ project_name }}.sample_id": "{{ sample_id }}", |
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"{{ project_name }}.tumor_bam": "{{ tumor_bam }}", |
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"{{ project_name }}.tumor_bam_bai": "{{ tumor_bam_bai }}", |
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"{{ project_name }}.normal_bam": "{{ normal_bam }}", |
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"{{ project_name }}.normal_bam_bai": "{{ normal_bam_bai }}", |
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"{{ project_name }}.VCF": "{{ VCF }}", |
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"{{ project_name }}.ref_fasta": "{{ ref_fasta }}", |
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"{{ project_name }}.ref_fasta_dir": "{{ ref_fasta_dir }}", |
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"{{ project_name }}.bed_file": "{{ bed_file }}", |
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"{{ project_name }}.ref_fasta_cnvkit": "{{ ref_fasta_cnvkit }}", |
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"{{ project_name }}.cluster_config": "{{cluster_config }}", |
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"{{ project_name }}.disk_size": "{{ disk_size }}", |
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"{{ project_name }}.docker_cnvkit": "{{ docker_cnvkit }}", |
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"{{ project_name }}.ref_flat": "{{ ref_flat }}", |
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"{{ project_name }}.annotsv_database":"{{ annotsv_database }}", |
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"{{ project_name }}.docker_annotsv":"{{ docker_annotsv }}", |
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"{{ project_name }}.docker_sequenza":"{{ docker_sequenza }}", |
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"{{ project_name }}.gc":"{{ gc }}", |
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"{{ project_name }}.Ploidy":"{{ Ploidy }}" |
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} |