更新 'workflow.wdl'

workflow.wdl

@@ -1,4 +1,5 @@
 import "./tasks/CNVkit.wdl" as cnvkit
+import "./tasks/AnnotSV.wdl" as AnnotSV
 
 workflow {{ project_name }} {
     String sample_id
@@ -37,5 +38,16 @@ workflow {{ project_name }} {
             disk_size=disk_size
     }
 
+	call AnnotSV.AnnotSV as cnvkit_AnnotSV{
+		input:
+               sample=sample_id,
+               somatic_vcf=cnvkit.cnv_bed,
+               annotsv_database=annotsv_database,
+               docker=docker_annotsv,
+               cluster_config=cluster_config,
+               disk_size=disk_size
+		
+   }
+
 
 }