CNVkit_Sequenza/inputs

{
"{{ project_name }}.sample_id": "{{ sample_id }}",
"{{ project_name }}.tumor_bam": "{{ tumor_bam }}",
"{{ project_name }}.tumor_bam_bai": "{{ tumor_bam_bai }}",
"{{ project_name }}.normal_bam": "{{ normal_bam }}",
"{{ project_name }}.normal_bam_bai": "{{ normal_bam_bai }}",
"{{ project_name }}.ref_fasta": "{{ ref_fasta }}",
"{{ project_name }}.ref_fasta_dir": "{{ ref_fasta_dir }}",
"{{ project_name }}.bed_file": "{{ bed_file }}",
"{{ project_name }}.ref_fasta_cnvkit": "{{ ref_fasta_cnvkit }}",
"{{ project_name }}.cluster_config": "{{cluster_config }}",
"{{ project_name }}.disk_size": "{{ disk_size }}",
"{{ project_name }}.docker_cnvkit": "{{ docker_cnvkit }}",
"{{ project_name }}.ref_flat": "{{ ref_flat }}",
"{{ project_name }}.annotsv_database":"{{ annotsv_database }}",
"{{ project_name }}.docker_annotsv":"{{ docker_annotsv }}",
"{{ project_name }}.docker_sequenza":"{{ docker_sequenza }}",
"{{ project_name }}.gc":"{{ gc }}"
}