meng
/
CNVkit_Sequenza
Watch 1
Star 0
Fork 0
Code Issues 0 Pull Requests 0 Releases 0 Wiki Activity
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
114 Commits
1 Branch
Branch: master
Branches Tags
${ item.name }
Create branch ${ searchTerm }
from 'master'
${ noResults }
CNVkit_Sequenza/defaults

13 lines
808B
Raw Permalink Blame History 

  1.  {      "ref_fasta":"GRCh38.d1.vd1.fa",

  2.         "ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",

  3. 		"ref_fasta_cnvkit":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/GRCh38.d1.vd1.fa",

  4.         "cluster_config":"OnDemand bcs.ps.g.4xlarge img-ubuntu-vpc",

  5.         "disk_size":"600",

  6.         "ref_flat":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/refFlat.txt",

  7.         "docker_cnvkit":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/cnvkit:0.9.6a0_v1",

  8.         "annotsv_database":"oss://hcc1395/reference_genome/AnnotSV/",

  9.         "docker_annotsv":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/annotsv:3.1.3",

  10.         "docker_sequenza":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sequenza:3.0.0v2",

  11.         "gc":"oss://hcc1395/reference_genome/Sequenza/GRCh38.gc50Base.wig.gz"

  12. 

  13.     }