更新 'workflow.wdl'

workflow.wdl

@@ -1,4 +1,5 @@
 import "./tasks/CNVkit.wdl" as cnvkit
+import "./tasks/AnnotSV.wdl" as AnnotSV
 
 workflow {{ project_name }} {
     String sample_id
@@ -12,6 +13,8 @@ workflow {{ project_name }} {
     String docker_cnvkit
     String cluster_config
     String disk_size
+    File annotsv_database
+    String docker_annotsv
 
     call cnvkit.cnvkit as cnvkit{
         input:
@@ -28,5 +31,16 @@ workflow {{ project_name }} {
             disk_size=disk_size
     }
 
+	call AnnotSV.AnnotSV as cnvkit_AnnotSV{
+		input:
+                sample=sample_id,
+                somatic_vcf=cnvkit.cnv_bed,
+                annotsv_database=annotsv_database,
+                docker=docker_annotsv,
+                cluster_config=cluster_config,
+                disk_size=disk_size
+		
+}
+
 
 }