ref_dir=ref_fasta_cnvkit, | ref_dir=ref_fasta_cnvkit, | ||||
fasta=ref_fasta, | fasta=ref_fasta, | ||||
ref_flat=ref_flat, | ref_flat=ref_flat, | ||||
center_at=center_at, | |||||
hrd=HRD.hrd, | hrd=HRD.hrd, | ||||
bed_file=bed_file, | bed_file=bed_file, | ||||
tumor_bam=tumor_bam, | tumor_bam=tumor_bam, |