更新 'tasks/CNVkit.wdl' · ef450bd9e2 - Choppy for Reproducible Omics Pipeline

更新 'tasks/CNVkit.wdl'

master

meng 2 years ago

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fcde49f237

commit

ef450bd9e2

1 changed files with 2 additions and 2 deletions

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tasks/CNVkit.wdlView File
								
															       echo ${sample}
															
															       echo ${sample}
														
															       PURITY=`awk -F'\t' '{print $6}' ${hrd} | sed -n '2p'`
															
															       Ploidy=`awk -F'\t' '{print $7}' ${hrd} | sed -n '2p'`
														
															       echo $PURITY
															
															       echo $Ploidy
														
															       center=`awk -v vv=$PURITY 'BEGIN {print log(2/vv)/log(2)}'`
															
															       center=`awk -v vv=$PURITY 'BEGIN {print log(2/vv)/log(2)}'`