更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -17,10 +17,11 @@ task cnvkit{
 
         set -o pipefail
         set -e
+        nt=$(nproc)
         
         echo ${sample}
 
-        /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} -n ${normal_bam} -m wgs -f ${ref_dir} --annotate ${ref_flat} --diagram --scatter
+        /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} -n ${normal_bam} -m wgs -f ${ref_dir} --annotate ${ref_flat} --diagram --scatter -p $nt
 
         #/root/miniconda2/bin/cnvkit.py scatter ${sample}.cnr -s ${sample}.cns -o ${sample}_scatter.pdf