更新 'tasks/CNVkit.wdl' · c002323db2 - Choppy for Reproducible Omics Pipeline

更新 'tasks/CNVkit.wdl'

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meng 2 years ago

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97a83e54b1

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c002323db2

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tasks/CNVkit.wdlView File
								
															        echo ${sample}
															
															        echo ${sample}
														
															        /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} -n ${normal_bam} -m wgs -f ${ref_dir}/${fasta} --annotate ${ref_flat} -p $nt
															
															        /root/miniconda2/bin/cnvkit.py batch ${tumor_bam} -n ${normal_bam} -m wgs -f ${ref_dir} --annotate ${ref_flat} -p $nt
														
															        # Check noise
															
															        # Check noise