更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -5,6 +5,7 @@ task cnvkit{
     String? fasta
     File ref_flat
     File bed_file
+    String center_at
     File tumor_bam
     File tumor_bam_index
     File? normal_bam
@@ -48,7 +49,7 @@ task cnvkit{
                   -p $nt
                   
        ls ./
-       /root/miniconda2/bin/cnvkit.py call ${sample}.cns/${sample}.cns --center-at -0.51 \
+       /root/miniconda2/bin/cnvkit.py call ${sample}.cns/${sample}.cns --center-at ${center_at} \
                   -o ${sample}.call.cns