String ref_fasta | String ref_fasta | ||||
File ref_flat | File ref_flat | ||||
File bed_file | File bed_file | ||||
String method | |||||
File gc | File gc | ||||
File tumor_bam | File tumor_bam | ||||
File tumor_bam_bai | File tumor_bam_bai | ||||
ref_flat=ref_flat, | ref_flat=ref_flat, | ||||
center_at=center_at, | center_at=center_at, | ||||
hrd=HRD.hrd, | hrd=HRD.hrd, | ||||
method=method, | |||||
bed_file=bed_file, | bed_file=bed_file, | ||||
tumor_bam=tumor_bam, | tumor_bam=tumor_bam, | ||||
tumor_bam_index=tumor_bam_bai, | tumor_bam_index=tumor_bam_bai, |