更新 'tasks/CNVkit.wdl'

tasks/CNVkit.wdl

@@ -29,7 +29,7 @@ task cnvkit{
     	/root/miniconda2/bin/cnvkit.py metrics ${sample}.cnr -s ${sample}.cns > ${sample}.stats
     
         # Derive each segment's absolute integer copy number, ploidy must be int value
-        #PURITY=`awk -F'\t' '{print $6}' ${hrd} | sed -n '2p'`
+        # PURITY=`awk -F'\t' '{print $6}' ${hrd} | sed -n '2p'`
         PURITY=3.3
         /root/miniconda2/bin/cnvkit.py segmetrics ${sample}.cnr -s ${sample}.cns --ci -o ${sample}.segmetrics.cns
         /root/miniconda2/bin/cnvkit.py call ${sample}.segmetrics.cns --drop-low-coverage --filter ci -m threshold --purity $PURITY -o ${sample}.call.cns