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tasks/CNVkit.wdl
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| task cnvkit{ | task cnvkit{ | ||||
| String sample | |||||
| String sample_id | |||||
| File ref_dir | File ref_dir | ||||
| String? fasta | String? fasta | ||||
| File ref_flat | File ref_flat | ||||
| String docker | String docker | ||||
| String cluster_config | String cluster_config | ||||
| String disk_size | String disk_size | ||||
| sample=basename(sample,".bam") | |||||
| sample=basename(sample_id,".bam") | |||||
| command <<< | command <<< | ||||
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