BQSR/inputs

{
"{{ project_name }}.sample_id": "{{ sample_id }}",
"{{ project_name }}.deduped_bam": "{{ deduped_bam }}",
"{{ project_name }}.deduped_bam_bai": "{{ deduped_bam_bai }}",
"{{ project_name }}.Seq_platform": "{{ Seq_platform }}",
"{{ project_name }}.ref_fasta": "{{ ref_fasta }}",
"{{ project_name }}.ref_fasta_dir": "{{ ref_fasta_dir }}",
"{{ project_name }}.fastqc": {{ fastqc | tojson }},
"{{ project_name }}.cluster_config": "{{cluster_config }}",
"{{ project_name }}.disk_size": "{{ disk_size }}",
"{{ project_name }}.docker_fastp": "{{ docker_fastp }}",
"{{ project_name }}.docker_sentieon": "{{ docker_sentieon }}",
"{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
"{{ project_name }}.docker_qualimap": "{{ docker_qualimap }}",
"{{ project_name }}.annot_gff": "{{ annot_gff }}",
"{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
"{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
"{{ project_name }}.dbsnp": "{{ dbsnp }}",
"{{ project_name }}.db_mills": "{{ db_mills }}",
"{{ project_name }}.bamqc": {{ bamqc | tojson }},
"{{ project_name }}.germline_resource": "{{ germline_resource }}",
"{{ project_name }}.germline_resource_tbi": "{{ germline_resource_tbi }}",
"{{ project_name }}.docker_manta": "{{ docker_manta }}",
"{{ project_name }}.docker_strelka": "{{ docker_strelka }}"
}