BQSR/defaults

    {
        "Seq_platform":"Illumina",
        "ref_fasta":"GRCh38.d1.vd1.fa",
        "ref_fasta_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",
        "docker_fastp":"registry-vpc.cn-shanghai.aliyuncs.com/easygene/fastp:v0.20.1_cv1",
		"docker_sentieon":"registry-vpc.cn-shanghai.aliyuncs.com/hcc1395_aliyun/sentieon-genomics:v202112.05",
        "docker_qualimap":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/qualimap:2.0.0",
        "docker_manta":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/manta:v1.6.0",
        "docker_strelka":"registry.cn-shanghai.aliyuncs.com/hcc1395_aliyun/strelka:v2.9.10",
        "SENTIEON_LICENSE":"172.25.2.5:8990",
        "cluster_config":"OnDemand ecs.c6.large img-ubuntu-vpc",
        "disk_size":"500",
        "fastqc":false,
        "annot_gff":"oss://hcc1395/reference_genome/gencode.v36.annotation.gff",
        "dbsnp_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",
        "dbmills_dir":"oss://hcc1395/reference_genome/GRCh38.d1.vd1/",
        "dbsnp":"dbsnp_146.hg38.vcf",
        "db_mills":"Mills_and_1000G_gold_standard.indels.hg38.vcf",
        "bamqc":false,
        "germline_resource":"oss://hcc1395/reference_genome/gnomAD/af-only-gnomad.v3.1.1.vcf.gz",
        "germline_resource_tbi":"oss://hcc1395/reference_genome/gnomAD/af-only-gnomad.v3.1.1.vcf.gz.tbi"

    }