Annovar_pipeline/workflow.wdl

import "./tasks/annovar.wdl" as annovar

workflow {{ project_name }}{
  File vcf 
  File annovar_database
  String docker_annovar
  String cluster_config
  String disk_size


  call annovar.ANNOVAR as ANNOVAR{
    input:
        vcf = vcf,
        annovar_database= annovar_database,
        docker = docker_annovar,
        cluster_config = cluster_config,
        disk_size = disk_size
  }
}