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tasks/ASCAT.wdl
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| set -e | set -e | ||||
| out_dir='./' | out_dir='./' | ||||
| /root/miniconda3/envs/hrd/bin/Rscript /home/ASCAT/ascat.r tumor_bam normal_bam ${sample}'_T' ${sample}'_N' ${sample} WGS $out_dir ${gender} ${ref_genome} | |||||
| /root/miniconda3/envs/hrd/bin/Rscript /home/ASCAT/ascat.r ${tumor_bam} ${normal_bam} ${sample}'_T' ${sample}'_N' ${sample} WGS $out_dir ${gender} ${ref_genome} | |||||
| ls ./ | ls ./ | ||||
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