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tasks/ASCAT.wdl
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| @@ -16,7 +16,7 @@ task ASCAT{ | |||
| set -e | |||
| out_dir='./' | |||
| /root/miniconda3/envs/hrd/bin/Rscript /home/ASCAT/ascat.r tumor_bam normal_bam ${sample}'_T' ${sample}'_N' ${sample} WGS ${out_dir} ${gender} ${ref_genome} | |||
| /root/miniconda3/envs/hrd/bin/Rscript /home/ASCAT/ascat.r tumor_bam normal_bam ${sample}'_T' ${sample}'_N' ${sample} WGS $out_dir ${gender} ${ref_genome} | |||
| ls ./ | |||
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