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test_dataportol1
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test_dataportol1/inputs

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  1. {

  2. 	"{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",

  3. 	"{{ project_name }}.idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",

  4. 	"{{ project_name }}.gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",

  5. 	"{{ project_name }}.idx_prefix": "genome_snp_tran",

  6. 	"{{ project_name }}.hisat2.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2",

  7. 	"{{ project_name }}.hisat2.cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",

  8. 	"{{ project_name }}.samtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",

  9. 	"{{ project_name }}.samtools.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",

  10. 	"{{ project_name }}.stringtie.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4",

  11. 	"{{ project_name }}.stringtie.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",

  12. 	"{{ project_name }}.fastp.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",

  13. 	"{{ project_name }}.fastp.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",

  14. 	"{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",

  15. 	"{{ project_name }}.fastqc.disk_size": "150",

  16. 	"{{ project_name }}.gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",

  17. 	"{{ project_name }}.fastqscreen.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  18. 	"{{ project_name }}.fastqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  19. 	"{{ project_name }}.qualimapBAMqc.disk_size": "500",

  20. 	"{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",

  21. 	"{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",

  22. 	"{{ project_name }}.screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  23. 	"{{ project_name }}.fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",

  24. 	"{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  25. 	"{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",

  26. 	"{{ project_name }}.qualimapBAMqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",

  27. 	"{{ project_name }}.qualimapBAMqc.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  28. 	"{{ project_name }}.fastqscreen.disk_size": "100",

  29. 	"{{ project_name }}.multiqc.disk_size": "100",

  30. 	"{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"

  31. 

  32. }