Zhihui
4 years ago
1 changed files with 1 additions and 5 deletions
+ 1
- 5
tasks/multiqc.wdl
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| Array[File] txt2 | Array[File] txt2 | ||||
| Array[File] bamqc_zip | Array[File] bamqc_zip | ||||
| Array[File] rnaseq_zip | |||||
| String docker | String docker | ||||
| String cluster_config | String cluster_config | ||||
| tar -zxvf $i -C /cromwell_root/tmp/bamqc | tar -zxvf $i -C /cromwell_root/tmp/bamqc | ||||
| done | done | ||||
| for i in ${sep=" " rnaseq_zip} | |||||
| do | |||||
| tar -zxvf $i -C /cromwell_root/tmp/rnaseq | |||||
| done | |||||
| multiqc /cromwell_root/tmp/ | multiqc /cromwell_root/tmp/ | ||||
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