Zhihui
4 years ago
2 changed files with 6 additions and 5 deletions
BIN
.DS_Store
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+ 6
- 5
workflow.wdl
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| call stringtie.stringtie as stringtie { | call stringtie.stringtie as stringtie { | ||||
| input: | input: | ||||
| sample_id=quartet[2], | |||||
| sample_id = quartet[2], | |||||
| gtf = gtf, | gtf = gtf, | ||||
| bam = samtools.out_bam | bam = samtools.out_bam | ||||
| } | } | ||||
| call multiqc.multiqc as multiqc { | call multiqc.multiqc as multiqc { | ||||
| input: | input: | ||||
| read1_zip=fastqc.read1_zip, | |||||
| read2_zip=fastqc.read2_zip, | |||||
| txt1=fastqscreen.txt1, | |||||
| txt2=fastqscreen.txt2 | |||||
| read1_zip = fastqc.read1_zip, | |||||
| read2_zip = fastqc.read2_zip, | |||||
| txt1 = fastqscreen.txt1, | |||||
| txt2 = fastqscreen.txt2, | |||||
| bamqc_zip = qualimapBAMqc.bamqc_zip | |||||
| } | } | ||||
| } | } |
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