test_dataportol1/inputs

{
    "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",
    "{{ project_name }}.sample_id": "{{ sample_id }}",
    "{{ project_name }}.read1": "{{ read1 }}",
    "{{ project_name }}.read2": "{{ read2 }}",
    "{{ project_name }}.idx": "oss://pgx-reference-data/reference/hisat2/grch38_snp_tran/",
    "{{ project_name }}.gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",
    "{{ project_name }}.idx_prefix": "genome_snp_tran",
    "{{ project_name }}.hisat2.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/hisat2:v2.1.0-2",
    "{{ project_name }}.hisat2.cluster": "OnDemand bcs.a2.3xlarge img-ubuntu-vpc",
    "{{ project_name }}.samtools.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/samtools:v1.3.1",
    "{{ project_name }}.samtools.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "{{ project_name }}.stringtie.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/stringtie:v1.3.4",
    "{{ project_name }}.stringtie.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "{{ project_name }}.fastp.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastp:0.19.6",
    "{{ project_name }}.fastp.cluster": "OnDemand bcs.a2.large img-ubuntu-vpc",
    "{{ project_name }}.adapter_sequence": "{{ adapter_sequence  }}",
    "{{ project_name }}.adapter_sequence_r2": "{{ adapter_sequence_r2 }}",
    "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
    "{{ project_name }}.fastqc.disk_size": "150",
    "{{ project_name }}.gtf": "oss://pgx-reference-data/reference/annotation/Homo_sapiens.GRCh38.93.gtf",
    "{{ project_name }}.fastqscreen.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
    "{{ project_name }}.fastqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
    "{{ project_name }}.qualimapBAMqc.disk_size": "500",
    "{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
    
    "{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
    "{{ project_name }}.qualimapRNAseq.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
    "{{ project_name }}.screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
    "{{ project_name }}.fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
    "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
    "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",
    "{{ project_name }}.qualimapRNAseq.disk_size": "500",
    "{{ project_name }}.qualimapBAMqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
    "{{ project_name }}.qualimapBAMqc.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
    "{{ project_name }}.qualimapRNAseq.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
    "{{ project_name }}.fastqscreen.disk_size": "100",
    "{{ project_name }}.multiqc.disk_size": "100",
    "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"

}