se_2159

defaults

@@ -4,9 +4,6 @@
     "trim_front1": "0",
     "trim_tail1": "0",
     "max_len1": "0",
-    "trim_front2": "0",
-    "trim_tail2": "0",
-    "max_len2": "0",
     "adapter_sequence": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCA",
     "disable_adapter_trimming": "0",
     "length_required": "50",

inputs

@@ -6,9 +6,6 @@
 	"{{ project_name }}.trim_front1": "{{ trim_front1 }}",
 	"{{ project_name }}.trim_tail1": "{{ trim_tail1 }}",
 	"{{ project_name }}.max_len1": "{{ max_len1 }}",
-	"{{ project_name }}.trim_front2": "{{ trim_front2 }}",
-	"{{ project_name }}.trim_tail2": "{{ trim_tail2 }}",
-	"{{ project_name }}.max_len2": "{{ max_len2 }}",
 	"{{ project_name }}.adapter_sequence": "{{ adapter_sequence }}",
 	"{{ project_name }}.disable_adapter_trimming": "{{ disable_adapter_trimming }}",
 	"{{ project_name }}.length_required1": "{{ length_required1 }}",

tasks/fastp.wdl

@@ -9,9 +9,6 @@ task fastp {
     Int trim_front1
     Int trim_tail1
     Int max_len1
-    Int trim_front2
-    Int trim_tail2
-    Int max_len2
     Int disable_adapter_trimming
     Int length_required
     Int umi_len

workflow.wdl

@@ -81,9 +81,6 @@ workflow {{ project_name }} {
 		trim_front1 = trim_front1,
 		trim_tail1 = trim_tail1, 
 		max_len1  = max_len1,
-		trim_front2  = trim_front2,
-		trim_tail2   = trim_tail2,
-		max_len2  = max_len2,
 		disable_adapter_trimming = disable_adapter_trimming,
 		length_required = length_required,
 		umi_len = umi_len,